Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., peptidoglycan DD-metalloendopeptidase family protein from Rhodanobacter sp000427505 FW510-R12

 Score =  165 bits (418), Expect = 1e-45
 Identities = 110/277 (39%), Positives = 140/277 (50%), Gaps = 15/277 (5%)

Query: 45  GSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPA----- 99
           G  Y V KGDTLY IA+    D  DL  +N +A PYTI PGQ++ L  P     A     
Sbjct: 59  GGSYAVMKGDTLYSIAFRQGVDFRDLAQWNGIAAPYTIWPGQRLTLSPPARAAAAPVAVT 118

Query: 100 YGGTGGAATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKT 159
            G  G A TV+  S+++   A  A  A        SS + +    +T S   + K  V  
Sbjct: 119 RGHAGAAPTVSARSNSTPVFAPIAPGAPPVH----SSTSVSAPVATTASVPPSAKPAVPA 174

Query: 160 VDQTKTKEYVE--PVGKQNVNVNVAKAKPSDEKIA---KWLWPTKGRVIKNFSAGDQGNK 214
                +   V   PV         A A     ++    +W WP  G ++  F + D    
Sbjct: 175 AAAATSVVPVAGVPVAAPTTLPPPAPAAAGVSRVTSGVQWRWPADGGLVGRFQSSD-AIP 233

Query: 215 GIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTV 274
           GI+IAG+ G  V A ADG VVYSGN L GYG L+IIKHN+ +LSAY HN + L KEGQ V
Sbjct: 234 GIEIAGKPGDVVRAAADGVVVYSGNGLVGYGELVIIKHNDSFLSAYGHNRRRLVKEGQRV 293

Query: 275 QAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP 311
             GQ+IA MGS+GT    L F+IR  G  V+P  YLP
Sbjct: 294 SMGQQIAEMGSTGTTRDELGFQIRKDGNPVDPLGYLP 330