Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., peptigoglycan-binding protein LysM from Pseudomonas simiae WCS417

 Score =  187 bits (474), Expect = 3e-52
 Identities = 108/301 (35%), Positives = 160/301 (53%), Gaps = 46/301 (15%)

Query: 11  LLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDL 70
           L+F S+L GC++   +    + ++    ++ +     Y V+KGDT++ IA+    D   L
Sbjct: 22  LVFSSVLVGCSSSPSSGARVVDRNNAVPQKPTVTTGQYVVRKGDTMFSIAFRYGWDYKAL 81

Query: 71  ISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQ 130
            + N++  PYTIHPGQ I+          + G  G+    V ++T +S + ++ T  + +
Sbjct: 82  AARNNIPVPYTIHPGQTIR----------FDGRTGSTPTTVVTNTGSSPSSSSKTTIITR 131

Query: 131 TVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEK 190
                        G+    +  K  P                         A   P+   
Sbjct: 132 PA-----------GTAKPASAAKPAP-------------------------APLPPAGPA 155

Query: 191 IAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIII 250
              W WP+ G +I  FS+    NKGIDIAG  GQ V+A +DGTVVY+G+ LRGYG L+II
Sbjct: 156 PTGWGWPSNGVLIGKFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVII 215

Query: 251 KHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYL 310
           KH++ Y+SAY HN +LL +EGQ V+ GQ IA MGS+GT+ V+LHFEIR QGK V+P ++L
Sbjct: 216 KHSDTYVSAYGHNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFL 275

Query: 311 P 311
           P
Sbjct: 276 P 276