Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 245 a.a., Murein hydrolase activator NlpD from Variovorax sp. SCN45

 Score =  124 bits (312), Expect = 2e-33
 Identities = 92/303 (30%), Positives = 138/303 (45%), Gaps = 70/303 (23%)

Query: 9   GLLLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVN 68
           G+ L  +L       T APV+G G+              Y V+ GDTLY IA  T +   
Sbjct: 11  GIALIAALTLAACTTTKAPVAGPGE--------------YVVQPGDTLYRIASRTGRTPG 56

Query: 69  DLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATV 128
           ++  +++L  P  +  GQ +++      PP     GGA+    A S  AS          
Sbjct: 57  EIARWSNLQDPDRLEAGQVLRV-----APP-----GGAS----APSADASAPPP------ 96

Query: 129 AQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSD 188
                                      P    D+ +      P  ++   V    A+ SD
Sbjct: 97  ---------------------------PPPRADRPRPPP-PRPAAREPDPVVPPAARRSD 128

Query: 189 EKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLI 248
                W WP +G+V+  F+     NKGIDI G  G  VV+  +G+V  +   LRGYG+++
Sbjct: 129 -----WGWPAQGQVVAGFNGSS--NKGIDIGGNTGDPVVSIGNGSVAVT-ETLRGYGSVL 180

Query: 249 IIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKR 308
           ++ H   Y+S Y +   +L K+GQ VQ GQKIA +G +     +LHFEIRY+GK+V+P++
Sbjct: 181 MVDHGGSYMSVYTNVRSVLVKQGQRVQRGQKIAEIGGADAGHPKLHFEIRYRGKAVDPRQ 240

Query: 309 YLP 311
           YLP
Sbjct: 241 YLP 243