Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., peptidoglycan DD-metalloendopeptidase family protein from Pseudomonas sp. SVBP6

 Score =  192 bits (489), Expect = 6e-54
 Identities = 117/308 (37%), Positives = 161/308 (52%), Gaps = 20/308 (6%)

Query: 4   YSFRLGLLLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLT 63
           Y   L  L   +L+ GC++ +   V  + ++    +R       Y V+ GDTL+ IA+  
Sbjct: 15  YKLLLIALAVGTLVTGCSSTSSNSVRVVDRNNAAPKRPVVTTGQYVVRPGDTLFSIAFRY 74

Query: 64  DKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAA 123
             D   L + N + PPYTI PGQ I+     +   + G    A T  VAS+ S+S+    
Sbjct: 75  GWDYKALAARNGITPPYTIRPGQAIR-----FDGRSSGPAPAAGTTVVASTPSSSIKTTI 129

Query: 124 TTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAK 183
               +  T            G   +   T      T   T T   V PV         A+
Sbjct: 130 IKRPLDST------------GKPIAAPATTAPATTTPATTPTTPSVAPVVATTAP---AQ 174

Query: 184 AKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRG 243
             P+    A W WP  G +I  F++    NKG+DIAG  GQ V A +DG+VVY+G+ LRG
Sbjct: 175 VPPAGRSTAGWAWPANGVLIGKFASNGSLNKGVDIAGDLGQPVFAASDGSVVYAGSGLRG 234

Query: 244 YGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKS 303
           YG L+IIKHN+ Y+SAY HN +LL +EGQ V+ GQ IA MGS+GT+ V+LHFEIR QGK 
Sbjct: 235 YGELVIIKHNDTYVSAYGHNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKP 294

Query: 304 VNPKRYLP 311
           V+P ++LP
Sbjct: 295 VDPLQFLP 302