Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 289 a.a., Murein hydrolase activator NlpD from Pseudomonas sp. DMC3

 Score =  201 bits (511), Expect = 2e-56
 Identities = 115/301 (38%), Positives = 166/301 (55%), Gaps = 35/301 (11%)

Query: 11  LLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDL 70
           L+  +LL GC++   + V  + ++ +  +R +     Y V+ GDTL+ IA+    D   L
Sbjct: 22  LVLSTLLVGCSSTKSSNVRVVDRNNSVAQRPTVTTGQYVVRPGDTLFSIAFRYGWDYKTL 81

Query: 71  ISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQ 130
            + N++  PYTIHPGQ I+          + G  G+   AV S++S+S + ++ T  + +
Sbjct: 82  AARNNIPTPYTIHPGQTIR----------FDGRSGSTPTAVVSNSSSSPSSSSKTTVIRR 131

Query: 131 TVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEK 190
                       NG+T +     K  V +V        + P G                 
Sbjct: 132 QA----------NGTTTTTTTGSKGVVPSVASKPAPAPLPPAGPAPTG------------ 169

Query: 191 IAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIII 250
              W WP+ G +I  FS+    NKGIDIAG  GQ V+A +DGTVVY+G+ LRGYG L+II
Sbjct: 170 ---WGWPSNGVLIGKFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVII 226

Query: 251 KHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYL 310
           KH+E Y+SAY HN +LL +EGQ V+ GQ IA MGS+GT+ V+LHFEIR QGK V+P ++L
Sbjct: 227 KHSETYVSAYGHNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFL 286

Query: 311 P 311
           P
Sbjct: 287 P 287