Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 237 a.a., peptidoglycan DD-metalloendopeptidase family protein from Paraburkholderia sabiae LMG 24235

 Score =  161 bits (407), Expect = 2e-44
 Identities = 100/265 (37%), Positives = 139/265 (52%), Gaps = 59/265 (22%)

Query: 47  YYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGA 106
           +Y V++GDTLY +A      V +++ +N+L+ P +I  GQ +++     +PP      G 
Sbjct: 30  FYRVERGDTLYKVARSNRTSVQNIVRWNNLSNPDSIEVGQVLRV-----SPPP-----GT 79

Query: 107 ATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTK 166
           AT +  SS S+S A +A+  T + + S +++T +    S +                   
Sbjct: 80  ATASTGSSRSSSSA-SASAGTSSSSRSAAADTPSAPASSISL------------------ 120

Query: 167 EYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAV 226
                                       +WP  G VI+ F   +  +KGIDIA   G  V
Sbjct: 121 ----------------------------IWPATGNVIRGFDGNN--SKGIDIANAAGTPV 150

Query: 227 VATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSS 286
            A A GTVVY+ N LRGYGNL+IIKHN  YL+AYAHN  LL KEG+TVQ GQKIA MG S
Sbjct: 151 FAAAGGTVVYASNGLRGYGNLLIIKHNADYLTAYAHNRTLLVKEGETVQQGQKIAEMGDS 210

Query: 287 GTNSVRLHFEIRYQGKSVNPKRYLP 311
             + V LHFE+RY G+S++P R LP
Sbjct: 211 DNDRVMLHFELRYAGRSIDPARSLP 235