Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., Lipoprotein NlpD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  161 bits (408), Expect = 1e-44
 Identities = 109/293 (37%), Positives = 148/293 (50%), Gaps = 49/293 (16%)

Query: 19  GCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAP 78
           G  AP PA V  +    N  + G     YY VK GDTL+ IA    ++  D+ ++N+L  
Sbjct: 29  GSAAPRPAEVVPMPGAENAGKPG-----YYTVKAGDTLFRIALDNGQNWRDIQAWNNLTN 83

Query: 79  PYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSKSSNT 138
           P  +  GQ +++  P                   SST+A+     TT+ V          
Sbjct: 84  PNALEVGQVLRVQPPG------------------SSTTATAPSGPTTSPVT--------- 116

Query: 139 KNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPT 198
               +    S+ L++  P        T     P          A A    ++I+ ++WP 
Sbjct: 117 ----SAGVASRPLSESTPPAASTSPSTPPAPAP----------APAAGGADEIS-FIWPA 161

Query: 199 KGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLS 258
           +G VI  F   +  NKG+ IAG+ G  VVA ADG VVY+G  LRGYGNLII+KHN  YL+
Sbjct: 162 QGSVITPFD--EANNKGVSIAGKIGDPVVAAADGRVVYAGAGLRGYGNLIILKHNNTYLT 219

Query: 259 AYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP 311
           AYAHN  LL +E Q V+ GQKIA MGSS T+ V+LHFE+R  GK V+P  +LP
Sbjct: 220 AYAHNQALLVREDQAVRQGQKIAEMGSSDTDRVKLHFEVRRLGKPVDPMAHLP 272