Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., murein hydrolase activator NlpD from Pectobacterium carotovorum WPP14

 Score =  251 bits (640), Expect = 2e-71
 Identities = 135/281 (48%), Positives = 175/281 (62%), Gaps = 14/281 (4%)

Query: 33  KDYNKVERGSYRG-SYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLW 91
           + Y  + +GSY G S Y VK+GDTL++IA++T  D  DL   N++  PY+++ GQ + L 
Sbjct: 70  RSYGNIPKGSYSGGSSYTVKRGDTLFYIAWITGNDYRDLAQRNNIPEPYSLNVGQSLSLG 129

Query: 92  LPNYTPPAYGG-TGGAATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQN 150
             +    + GG T G   +A   +T   V    ++A + QT S  S + N  +G+   QN
Sbjct: 130 SGSGNNASGGGLTSGGGMLATTDATRGGVPTPPSSAQI-QTTSVDSQSTNAYSGNQGKQN 188

Query: 151 LTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGD 210
           + K  P      T             V+   A A  +   +  W WPT G+VI +FS  +
Sbjct: 189 VGKMLPTTGAPTTAP-----------VSAPAAVASSNTAAVGSWRWPTDGKVIDSFSDSE 237

Query: 211 QGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKE 270
            GNKGIDIAG RGQ + ATA G VVY+GNALRGYGNLIIIKHN+ YLSAYAHND +L +E
Sbjct: 238 GGNKGIDIAGSRGQPITATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVRE 297

Query: 271 GQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP 311
            Q V AGQKIATMGS+GT+SVRLHFEIRY+GKSVNP R+LP
Sbjct: 298 QQDVTAGQKIATMGSTGTSSVRLHFEIRYKGKSVNPLRFLP 338



 Score = 27.3 bits (59), Expect = 5e-04
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 10/45 (22%)

Query: 209 GDQGNKGIDIAGQ------RGQAVVATADGTVVYSGNALRGYGNL 247
           G+ GN+G  ++         G++V  T+DG +VY+    R YGN+
Sbjct: 35  GNTGNRGGMLSAPPSRISTAGESVATTSDGRIVYN----RSYGNI 75