Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., putative lipoprotein (VIMSS) from Escherichia coli BW25113

 Score =  194 bits (493), Expect = 2e-54
 Identities = 124/307 (40%), Positives = 161/307 (52%), Gaps = 77/307 (25%)

Query: 8   LGLLLFCS---LLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTD 64
           LG+++  S   LL GC+    +            + G+Y GS Y VK+GDTLY I+  T 
Sbjct: 11  LGIVMLLSVGLLLAGCSGSKSS------------DTGTYSGSVYTVKRGDTLYRISRTTG 58

Query: 65  KDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAAT 124
             V +L   N ++PPYTI  GQK+KL             GGA +   +S T  S AK+ T
Sbjct: 59  TSVKELARLNGISPPYTIEVGQKLKL-------------GGAKS---SSITRKSTAKS-T 101

Query: 125 TATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKA 184
           T T + T S +                              K    PVG++         
Sbjct: 102 TKTASVTPSSAV----------------------------PKSSWPPVGQRC-------- 125

Query: 185 KPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGY 244
                    WLWPT G+VI  +S  D GNKGIDI+  RG  + A   G VVY GN LRGY
Sbjct: 126 ---------WLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGY 176

Query: 245 GNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSV 304
           GNLI+IKH+E Y++AYAHND +L   GQ+V+AGQKIATMGS+   SVRLHF+IRY+  ++
Sbjct: 177 GNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAI 236

Query: 305 NPKRYLP 311
           +P RYLP
Sbjct: 237 DPLRYLP 243