Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., murein hydrolase activator NlpD from Erwinia tracheiphila SCR3

 Score =  239 bits (610), Expect = 7e-68
 Identities = 132/280 (47%), Positives = 171/280 (61%), Gaps = 18/280 (6%)

Query: 35  YNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPN 94
           Y  + +GSY G  Y VK GDTL++IA++T  D  DL   N+++ PY+++ GQ++++    
Sbjct: 105 YGNIPKGSYSGQSYTVKHGDTLFYIAWITGNDFRDLAQRNNISAPYSLNVGQQLQV---- 160

Query: 95  YTPPAYGGT--GGAATVAVASSTSASVAKAATTATVAQTVSKSSNTK-NVQNGSTNSQNL 151
                 GGT  GG A  A     S  V K +       TV++    K +  +G  +   +
Sbjct: 161 --SNGSGGTLTGGNAVTAADDKASGIVPKPSPGQIGGVTVAQKPVIKYSEDSGKPSEGKM 218

Query: 152 TKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQ 211
                  TV  T        V    V+     A P    +  W WPT G++I NFSA + 
Sbjct: 219 LPSSGTNTVAMTTAS-----VTASTVSSTTNSATP----VGSWRWPTDGKIIDNFSASEG 269

Query: 212 GNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEG 271
           GNKGIDIAG  GQ V++TA G VVY+GNALRGYGNLIIIKHN+ YLSAYAHND +L +E 
Sbjct: 270 GNKGIDIAGSPGQPVLSTASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQ 329

Query: 272 QTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP 311
           Q V++GQKIATMGS+GT+SVRLHFEIRY+GKSVNP RYLP
Sbjct: 330 QEVKSGQKIATMGSTGTSSVRLHFEIRYKGKSVNPLRYLP 369