Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 247 a.a., Membrane proteins related to metalloendopeptidases from Enterobacter asburiae PDN3

 Score =  192 bits (488), Expect = 7e-54
 Identities = 113/273 (41%), Positives = 148/273 (54%), Gaps = 66/273 (24%)

Query: 39  ERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPP 98
           + GSY GS Y VK+GDTLY I+  T   V DL   N+L+PPYTI  GQ++K+        
Sbjct: 33  DMGSYSGSVYTVKRGDTLYRISRATGTSVKDLARMNNLSPPYTIEVGQQLKV-------- 84

Query: 99  AYGGTGGAATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVK 158
               +GG+                            SS  K+   G T      K  P  
Sbjct: 85  ----SGGS----------------------------SSGKKSSSKGKT-----AKVTPSY 107

Query: 159 TVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDI 218
            V Q+       PVG++                  W+WP  G+V+  +S  + GNKGIDI
Sbjct: 108 QVPQSSWP----PVGQRC-----------------WIWPASGKVVAPYSLSEGGNKGIDI 146

Query: 219 AGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQ 278
           A  RG  V A+  G VVY GN LRGYGNLI+IKH E Y++AYAHND +L   GQ V+AGQ
Sbjct: 147 AAARGTPVYASGAGKVVYVGNQLRGYGNLIMIKHGEDYITAYAHNDTMLVNNGQNVKAGQ 206

Query: 279 KIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP 311
           KIATMGS+GT++V+LHF+IRY+  +++P+RYLP
Sbjct: 207 KIATMGSTGTDAVKLHFQIRYKATAIDPQRYLP 239