Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., murein hydrolase activator NlpD from Dickeya dianthicola ME23

 Score =  248 bits (632), Expect = 2e-70
 Identities = 142/313 (45%), Positives = 187/313 (59%), Gaps = 37/313 (11%)

Query: 33  KDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWL 92
           + YN + +GSY G+ Y VK+GDTL++IA++T  D  +L   N++  PY+++ GQ + L  
Sbjct: 97  RSYNSIPKGSYSGNSYTVKRGDTLFYIAWITGNDYRELAQRNNVQEPYSLNVGQSLSL-- 154

Query: 93  PNYTPPAYGGTGGAATV----AVASSTSASVAKAATTATVAQTVSKSSNT-KNVQNGSTN 147
                 A G T G A      AV +S     + A++   + +  SK+S   + + +G+T 
Sbjct: 155 -GSNMNAGGSTQGMAIAGTPTAVTTSAPVESSSASSGHMLPENASKASGDGRMLSSGNTG 213

Query: 148 SQN------------LTKKDP-----VKTVDQTKTKEYVEPVGKQNVN------VNVAKA 184
                           T+  P        VD   T  Y E  GKQN           A  
Sbjct: 214 GNGGHMLPANAAAAGATQSSPSAQMQTTQVDSQPTNAYSEVSGKQNAGGKMLPAAGAATT 273

Query: 185 KPSDEK------IAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSG 238
            P+ E       IA W WPT G+VI +FSA + GNKGIDIAG RGQ+V+ATA G VVY+G
Sbjct: 274 LPATEPTQTNTAIASWRWPTDGKVIDSFSASEGGNKGIDIAGSRGQSVIATASGRVVYAG 333

Query: 239 NALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIR 298
           NALRGYGNLIIIKHN+ YLSAYAHN+ +L +E Q V+AGQ+IATMGS+GT+SVRLHFEIR
Sbjct: 334 NALRGYGNLIIIKHNDDYLSAYAHNETMLVREQQEVKAGQQIATMGSTGTSSVRLHFEIR 393

Query: 299 YQGKSVNPKRYLP 311
           Y+GKSVNP R+LP
Sbjct: 394 YKGKSVNPLRFLP 406