Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., murein hydrolase activator NlpD from Dickeya dadantii 3937

 Score =  248 bits (633), Expect = 2e-70
 Identities = 143/315 (45%), Positives = 187/315 (59%), Gaps = 40/315 (12%)

Query: 33  KDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWL 92
           + YN + +GSY G+ Y VK+GDTL++IA++T  D  +L   N++  PY+++ GQ + L  
Sbjct: 96  RSYNSIPKGSYSGNTYTVKRGDTLFYIAWITGNDYRELAQRNNIQEPYSLNVGQSLSL-- 153

Query: 93  PNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVA-----------QTVSKSSNTKNV 141
                 A G T G A +A A +T  + A   T+A V            +   K+S    +
Sbjct: 154 -GSNMNAGGSTQGMA-IASAPTTITTSAPVTTSAPVESSPAGSGHMLPENAGKASGGGRM 211

Query: 142 QNGSTNSQNLTKKDPVKT--------------VDQTKTKEYVEPVGKQNVN-----VNVA 182
            +G+  + +     P                 VD   T  Y E  GKQNV         A
Sbjct: 212 LSGNNTAGSSGHMLPASAAAAGAASPQMQTTQVDSQPTNAYSEGSGKQNVGKMLPTAGAA 271

Query: 183 KAKPSDEK------IAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVY 236
              P+ E       IA W WPT G+VI +FSA + GNKGIDIAG RGQ+V+ATA G VVY
Sbjct: 272 TTLPTTEPTQTSTAIASWRWPTDGKVIDSFSASEGGNKGIDIAGSRGQSVIATASGRVVY 331

Query: 237 SGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFE 296
           +GNALRGYGNLIIIKHN+ YLSAYAHN+ +L +E Q V+AGQ+IATMGS+GT+SVRLHFE
Sbjct: 332 AGNALRGYGNLIIIKHNDDYLSAYAHNETMLVREQQEVKAGQQIATMGSTGTSSVRLHFE 391

Query: 297 IRYQGKSVNPKRYLP 311
           IRY+GKSVNP R+LP
Sbjct: 392 IRYKGKSVNPLRFLP 406