Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., peptidoglycan DD-metalloendopeptidase family protein from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 77.4 bits (189), Expect = 5e-19
 Identities = 69/257 (26%), Positives = 99/257 (38%), Gaps = 43/257 (16%)

Query: 45  GSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTG 104
           G+ Y ++ GDT+  +       V  LI  N L P   I  GQ+I L      P A   TG
Sbjct: 125 GAAYIIQPGDTISGVGRRFQTPVQTLIDLNGLGPRGAITTGQRIIL------PEAAVDTG 178

Query: 105 GAATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTK 164
                  AS     V             S ++                   PV+T    +
Sbjct: 179 RDPYATGASPVGVLVPNNGAVPPPPPPPSGNAAL-----------------PVQTRPVEQ 221

Query: 165 TKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQG--NKGIDIAGQR 222
           T       G+ N+                 LWP +G +++ F     G  N GI+I    
Sbjct: 222 TNAAGAAAGQPNL-----------------LWPVRGDIVRRFGPVGMGERNNGINIGASA 264

Query: 223 GQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIAT 282
           G  V A+A G V Y G+ L G G  ++I H   + + Y H      K+G  V+AGQ+I T
Sbjct: 265 GATVSASAAGRVAYVGSDLVGQGLTVLIVHANGWRTVYGHLGSATVKDGDDVRAGQQIGT 324

Query: 283 MG-SSGTNSVRLHFEIR 298
           +G ++G     +HFE R
Sbjct: 325 VGLTAGDGRPSIHFETR 341