Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., activator of AmiC murein hydrolase activity, lipoprotein from Escherichia coli BL21

 Score =  253 bits (645), Expect = 7e-72
 Identities = 134/279 (48%), Positives = 179/279 (64%), Gaps = 9/279 (3%)

Query: 33  KDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWL 92
           + Y  + +GSY GS Y VKKGDTL++IA++T  D  DL   N++  PY ++ GQ +++  
Sbjct: 108 RQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGN 167

Query: 93  PNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLT 152
            + TP     TGG A     ++    V K A  +TVA   S+ + T +  +G  ++  + 
Sbjct: 168 ASGTPI----TGGNAITQADAAEQGVVIKPAQNSTVA-VASQPTITYSESSGEQSANKML 222

Query: 153 KKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQG 212
             +  K    T T     P    +       +  +   I+ W WPT+G+VI+ F A + G
Sbjct: 223 PNN--KPAATTVTAPVTVPTA--STTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGG 278

Query: 213 NKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQ 272
           NKGIDIAG +GQA++ATADG VVY+GNALRGYGNLIIIKHN+ YLSAYAHND +L +E Q
Sbjct: 279 NKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQ 338

Query: 273 TVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP 311
            V+AGQKIATMGS+GT+S RLHFEIRY+GKSVNP RYLP
Sbjct: 339 EVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLP 377