Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., tRNA pseudouridine(13) synthase TruD from Rhodanobacter sp000427505 FW510-R12

 Score =  233 bits (593), Expect = 7e-66
 Identities = 139/336 (41%), Positives = 197/336 (58%), Gaps = 8/336 (2%)

Query: 5   LSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELA 64
           +  L Y  G P   A+L+++PE FQV E+LGY   G GEH ++ + K G NT +VA ELA
Sbjct: 1   MQELPYAHGTPPLAARLRSMPEDFQVEEILGYDADGSGEHALLWVEKRGANTDWVARELA 60

Query: 65  KACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKL 124
           K  GVP  AV +AGLKDRHAVT Q  SV L     PD+SAF   +  +++L  TRH +KL
Sbjct: 61  KFAGVPPVAVGYAGLKDRHAVTRQMFSVQLAGKPDPDWSAF--PHADVKVLAATRHARKL 118

Query: 125 RPGDLQGNEFVVTLSEVS-DVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWGR 183
           + G L+GN FV+ L EV+ D AA    L  +A  GVPNYFG QRFGR G N+++AR    
Sbjct: 119 KRGALRGNRFVLVLREVAGDRAAAEQVLTQIAARGVPNYFGEQRFGREGGNVAQAR--AM 176

Query: 184 DNVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGDI--ALAEQQMFNVDGDL 241
              R  +++QRS  LSAARS IFN +++ R+ +  +   ++G+I      +  F  +   
Sbjct: 177 FGGRRVDRDQRSFLLSAARSHIFNAVLAARVGRVAWDTPLDGEIWSLAGSRSWFGPEPFT 236

Query: 242 ALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRAI 301
            +  +RL   ++  S  L G    P +G+A  LE+    A  DL A +   RM  +RR +
Sbjct: 237 DVLAERLARADIHPSGPLWGQGEPPATGEAGALEREVAAANDDLAAGLAAARMEQERRPL 296

Query: 302 ALKAQNLSWQ-VQEDQITLRFSLDAGSFATSLVREL 336
            L  ++L W+ + +D + L F L AG++AT +VREL
Sbjct: 297 RLLPKDLHWRWLDDDALELSFELPAGTYATVVVREL 332