Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  239 bits (610), Expect = 8e-68
 Identities = 141/342 (41%), Positives = 197/342 (57%), Gaps = 7/342 (2%)

Query: 4   ILSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANEL 63
           +L P AY  G+   +A LKA  E FQV+EVL   LTG GEHL + + K G NT   A  +
Sbjct: 6   LLGPRAY--GEALGRAVLKATAEDFQVDEVLDIPLTGEGEHLWLWVEKRGLNTEEAARRI 63

Query: 64  AKACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKK 123
           AKA GVP R VS+AGLKDR A+T QW SV LP    PD SA  A+  +++IL+  RH +K
Sbjct: 64  AKAAGVPLRTVSYAGLKDRQALTRQWFSVQLPGKADPDMSA--AENDTLKILKTARHKRK 121

Query: 124 LRPGDLQGNEFVVTLSEVS-DVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWG 182
           L+ G    N F + L++++ D AA+ +RL+ +A+ G+PNYFG+QRFG +G N+ +AR W 
Sbjct: 122 LQRGAHSANGFTLRLTQLAGDTAAIDARLQLIAQHGIPNYFGAQRFGHNGGNVVDAREWA 181

Query: 183 RDNVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNVDGDL 241
                   +N RS  LS ARS++FN++++ R+  G + R   GD +A  + + F   G+ 
Sbjct: 182 ARRALPEQRNVRSRLLSTARSFLFNKVLASRVADGSWQRAQVGDLLAFTDSRSFFPAGEA 241

Query: 242 ALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRAI 301
              D RL   ++  +    G+   P SG    LEQA    E DL   +    M  +RR +
Sbjct: 242 ECSDPRLAILDLHPTGPQWGEGDSPASGATFELEQAVAAGEADLRDWLVNAGMSQERRIL 301

Query: 302 ALKAQNLSWQVQE-DQITLRFSLDAGSFATSLVRELIEEIPV 342
            L    L+W     D + L F L AG FAT LVREL++ +PV
Sbjct: 302 RLPIGGLTWHYPSLDILQLEFVLPAGCFATVLVRELVDLVPV 343