Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 167 a.a., tRNA pseudouridine(13) synthase (EC 5.4.99.27) from Variovorax sp. SCN45

 Score =  119 bits (299), Expect = 4e-32
 Identities = 67/161 (41%), Positives = 95/161 (59%), Gaps = 3/161 (1%)

Query: 5   LSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELA 64
           L+ L    G P  +A++++ PE F+V E+  ++ +G GEHL++ + K G NT+F A  LA
Sbjct: 9   LNELPRAHGAPALRARIRSAPEDFRVEELPSFAASGSGEHLLLTVEKRGMNTAFAAKRLA 68

Query: 65  KACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKL 124
           +  GV   A+ +AGLKDRHAVT Q  S H P    PD +  L +   + +LE   H KKL
Sbjct: 69  QWAGVGEVAIGYAGLKDRHAVTVQRFSGHPPKRVAPDLA--LLESDELRVLEHHWHAKKL 126

Query: 125 RPGDLQGNEFVVTLSEV-SDVAAVLSRLETVAELGVPNYFG 164
             G L GN FV+ L EV  +   +  RL+ ++  GVPNYFG
Sbjct: 127 PRGALAGNRFVLALREVEGERDRIEQRLQEISAHGVPNYFG 167