Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., tRNA pseudouridine synthase D from Pseudomonas putida KT2440

 Score =  223 bits (569), Expect = 5e-63
 Identities = 135/339 (39%), Positives = 192/339 (56%), Gaps = 7/339 (2%)

Query: 3   DILSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANE 62
           ++L P A   G+P   A LKA+ E FQV+EVL   L+G GEHL + + K   NT   A  
Sbjct: 5   ELLGPRA--SGEPLGTAILKAVAEDFQVDEVLDIPLSGQGEHLWLWVEKRDLNTEEAARR 62

Query: 63  LAKACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDK 122
           LA+A GVP R++S+AGLKDR A+T QW S+HLP    PD S   A+  S+ +L+  RH +
Sbjct: 63  LARAAGVPVRSISYAGLKDRQALTRQWFSLHLPGKADPDLSR--AEDASLRVLKQVRHQR 120

Query: 123 KLRPGDLQGNEFVVTLSEV-SDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRW 181
           KL+ G    N F + L+ + +D  AV +RLE + + GVPNYFG+QRFG  G N+ +A  W
Sbjct: 121 KLQRGAHSANGFTLRLTALAADHQAVDARLEQLRQQGVPNYFGTQRFGHGGGNVHDALDW 180

Query: 182 GRDNVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNVDGD 240
                    +N RS  LSA RS++FNQ+++ R+  G +AR   GD +A  + + F   G+
Sbjct: 181 AARKALPEQRNVRSRLLSAGRSYLFNQLLAARVADGSWARAQVGDLLAFTDSRSFFPAGE 240

Query: 241 LALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRA 300
               D RL   ++  +  + G+ A P  G    LE A    +P L   +    M H+RR 
Sbjct: 241 AECADPRLAILDLHPTGPMWGEGASPAGGAPAQLENAIGARQPALCQWLAQAGMDHERRI 300

Query: 301 IALKAQNLSWQVQE-DQITLRFSLDAGSFATSLVRELIE 338
           + L    L+W   E D + L F L AG FAT +VRE+++
Sbjct: 301 LRLPIGGLTWHYPEPDILQLEFVLPAGCFATVVVREVVD 339