Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., tRNA pseudouridine(13) synthase TruD from Serratia liquefaciens MT49

 Score =  281 bits (718), Expect = 2e-80
 Identities = 158/339 (46%), Positives = 220/339 (64%), Gaps = 6/339 (1%)

Query: 5   LSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELA 64
           ++ L +L G+P +   LKA PE F V E LG+   G GEH++V IRK G NT FVA+ LA
Sbjct: 3   MANLTWLHGQPQSTGVLKANPEDFVVVEDLGFEPDGEGEHVLVNIRKNGCNTQFVADYLA 62

Query: 65  KACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKL 124
           +  G+ +R+VS+AGLKDRHAVTEQW  +HLP  ETPDF+ F  +    E+L   RH +K+
Sbjct: 63  RFAGIHARSVSYAGLKDRHAVTEQWFCLHLPGKETPDFTQFSLE--GCEVLASARHLRKM 120

Query: 125 RPGDLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWGRD 184
           R G L+GN F + L  +SD   V  RL+ +   GVPNYFGSQRFGR GNNL  ARRW  D
Sbjct: 121 RIGTLKGNAFTLVLRHISDRQDVEQRLQAIEAGGVPNYFGSQRFGRGGNNLVMARRWAND 180

Query: 185 NVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNV--DGDL 241
            +R + +++RS YLSA+RS +FN I S+R+        +EGD + L+ +  + V    +L
Sbjct: 181 EIRVKERSKRSFYLSASRSALFNLIASRRLANQQQHTVLEGDALQLSGRGSWFVAKPEEL 240

Query: 242 ALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRAI 301
               QRL+AGE+ I+A L GD    T+G+AL  EQ  L  +P+LM+L++  R+   RRA+
Sbjct: 241 EALQQRLEAGELMITAPLPGDGEPGTAGEALSFEQQCLLEQPELMSLLKRERVDPARRAL 300

Query: 302 ALKAQNLSWQVQED-QITLRFSLDAGSFATSLVRELIEE 339
            L+ +++ W   +D  + LRF L AGSFATS+VRE++ +
Sbjct: 301 LLQPKDMQWDWWDDATVELRFWLPAGSFATSVVREIMRQ 339