Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., tRNA pseudouridine 13 synthase (EC 4.2.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  261 bits (666), Expect = 3e-74
 Identities = 155/342 (45%), Positives = 211/342 (61%), Gaps = 6/342 (1%)

Query: 8   LAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELAKAC 67
           L +L GKP     LKA PE F V E LG++  G GEH+++RI K G NT FVA+ LAK  
Sbjct: 7   LTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFL 66

Query: 68  GVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKLRPG 127
            + +R VS+AG KD+HAVTEQWL   +P  E PDFSAF  Q    ++LE  RH +KLR G
Sbjct: 67  KIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAF--QLEGCKVLEYARHKRKLRLG 124

Query: 128 DLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWGRDNVR 187
            L+GN F + L E+SD   V +RL+ + + GVPNYFG+QRFG  G+NL  A RW + N  
Sbjct: 125 ALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAP 184

Query: 188 SRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNV--DGDLALW 244
            R++N+RS +LSAARS +FNQIV +R+++  F + ++GD + LA +  + V    +L   
Sbjct: 185 VRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPEL 244

Query: 245 DQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRAIALK 304
            +R+   E+ I+A+L G     T   AL  EQ  +  E  L +L+   ++   RRA+ L 
Sbjct: 245 QRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLY 304

Query: 305 AQNLSWQVQED-QITLRFSLDAGSFATSLVRELIEEIPVVRH 345
            Q LSW   +D  + LRF L AGSFATS+VRELI  +    H
Sbjct: 305 PQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAH 346