Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., tRNA pseudouridine synthase, TruD family from Enterobacter asburiae PDN3

 Score =  260 bits (664), Expect = 4e-74
 Identities = 158/341 (46%), Positives = 210/341 (61%), Gaps = 7/341 (2%)

Query: 1   MTDILSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVA 60
           MTD    L YL GKP     LKA PE F V E LG+   G GEH++VRI K G NT FVA
Sbjct: 1   MTDF-DNLTYLHGKPQGNGVLKASPEDFLVVEDLGFEPDGEGEHILVRILKNGCNTRFVA 59

Query: 61  NELAKACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRH 120
           + LAK   + +R VS+AG KD+HAVTEQWL   +P    PD S F  +    ++LE  RH
Sbjct: 60  DALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGNTMPDLSKF--ELEGCKVLEFARH 117

Query: 121 DKKLRPGDLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARR 180
            +KLR G L+GN+F + L EV+D   V  RL  + ELGVPNYFG+QRFG  G+NL  A R
Sbjct: 118 KRKLRLGALKGNDFTLVLREVTDRDDVEKRLSAIQELGVPNYFGAQRFGIGGSNLQGALR 177

Query: 181 WGRDNVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNV-- 237
           W + +   R++N+RS +LSAARS +FNQIVS+R+++    + + GD + LA +  + V  
Sbjct: 178 WAQSDAPVRDRNKRSFWLSAARSALFNQIVSERLKKPDANQVVVGDALQLAGRGSWFVAT 237

Query: 238 DGDLALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHD 297
             ++A    R+ A  + I+AAL G     T G AL  EQ+ +   P+L +L+   ++   
Sbjct: 238 AEEMADVQSRVDAKALMITAALPGTGDWGTQGDALAAEQSAVADAPELQSLLVREKVEAA 297

Query: 298 RRAIALKAQNLSWQVQED-QITLRFSLDAGSFATSLVRELI 337
           RRA+ L  Q LSW   +D  + LRF L AGSFATS+VRELI
Sbjct: 298 RRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELI 338