Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., tRNA pseudouridine(13) synthase TruD from Dickeya dianthicola ME23

 Score =  268 bits (685), Expect = 2e-76
 Identities = 158/334 (47%), Positives = 209/334 (62%), Gaps = 6/334 (1%)

Query: 8   LAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELAKAC 67
           L +L G+P A   LKA P+ F V E LG++  G GE ++VR+RK G NT+FVA  LAK  
Sbjct: 7   LLWLHGEPAATGVLKASPDDFFVAEDLGFAPDGDGEQVLVRVRKRGCNTTFVAEALAKFA 66

Query: 68  GVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKLRPG 127
           G+P+R+VS+AGLKDRHAVTEQW  +HLP    P +SAF  +    EILE  RH +KLR G
Sbjct: 67  GIPARSVSYAGLKDRHAVTEQWFCLHLPGKAEPAWSAFALE--GCEILEAQRHRRKLRIG 124

Query: 128 DLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWGRDNVR 187
            L+GN F + L EVSD A V +RL  +A  GVPNYFGSQRFGR GNNL +ARRW  D +R
Sbjct: 125 ALRGNHFSLVLREVSDRAEVDARLALIAGEGVPNYFGSQRFGRDGNNLEQARRWANDEIR 184

Query: 188 SRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNV--DGDLALW 244
            +++++RS YLSA RS +FN + S R+      + + GD + L  +  + V    +LA  
Sbjct: 185 VKDRSKRSFYLSAVRSELFNLMASARLTTYGATQVLTGDALQLTGRSSWFVVKPEELADA 244

Query: 245 DQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRAIALK 304
             R+ AGE+ I+AAL G        QAL  EQ  L+ +  L++L+   R+   RRAI L 
Sbjct: 245 QSRVAAGELQITAALPGQGEPGVQEQALAFEQQCLEEQALLLSLLTRERVDSARRAIMLH 304

Query: 305 AQNLSWQ-VQEDQITLRFSLDAGSFATSLVRELI 337
            Q + W  +    + L F L AG FATS+VREL+
Sbjct: 305 PQGMRWSWLDNATLELHFWLPAGCFATSVVRELL 338