Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., tRNA pseudouridine synthase D from Alteromonas macleodii MIT1002

 Score =  221 bits (563), Expect = 2e-62
 Identities = 130/347 (37%), Positives = 194/347 (55%), Gaps = 18/347 (5%)

Query: 10  YLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELAKACGV 69
           Y   KP +    K   + FQV E LGY+  G GEH  V I KT  NT+FVA +LA+   +
Sbjct: 11  YYFAKPVSTGIFKFQADDFQVVEDLGYTPCGEGEHQFVFIEKTNTNTAFVAEQLARFVNL 70

Query: 70  PSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKLRPGDL 129
           P R +++AG KD++AVT+QW  +H P     DFS F  +   +++L+  RH+KKLR G L
Sbjct: 71  PLRQITYAGRKDKYAVTQQWFGIHAPGKPDFDFSNF--ELEGVKVLKQMRHNKKLRTGQL 128

Query: 130 QGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFG-RHGNNLSEARRWGR----- 183
           +GN F +TL +V    A+  RL+ + + GVPNY+G QRFG    N++ E +R G      
Sbjct: 129 KGNHFTITLRQVLHPEAIEERLQEIEKHGVPNYYGEQRFGVMRLNDMGEVQRGGNLVMAE 188

Query: 184 ---DNVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNV-- 237
              +    R++N+RS+ LSA RSW+FN+++S R+E+  F +   GD + L+    F +  
Sbjct: 189 RMVNGETIRHRNKRSMALSALRSWLFNEMLSARLEKDMFDKVTHGDALVLSGSNSFFINE 248

Query: 238 --DGDLALWD--QRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNR 293
             DG     D  +R  A +V  SA L G   L T    L LEQ+  +   +++  +    
Sbjct: 249 GSDGSEQQQDAQRRFNAKDVCPSAPLWGKGELVTQADTLALEQSVAEQNSEVIDFLSQCG 308

Query: 294 MRHDRRAIALKAQNLSWQVQEDQITLRFSLDAGSFATSLVRELIEEI 340
              +RRAI +    L WQ + D  T+ F+L +G FATS++RE +E +
Sbjct: 309 FEQERRAIKIWPSQLEWQSKGDTFTISFALPSGCFATSVLRECVETL 355