Pairwise Alignments

Query, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., DNA primase from Pseudomonas putida KT2440

 Score =  461 bits (1185), Expect = e-134
 Identities = 240/477 (50%), Positives = 325/477 (68%), Gaps = 17/477 (3%)

Query: 1   MAGHIPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYH 60
           MAG IP+SFIDDL+ RLDIVDV+ +RV+LKK GKNYSACCPFH EKTPSF+VS +KQFY+
Sbjct: 1   MAGLIPQSFIDDLINRLDIVDVVSSRVQLKKTGKNYSACCPFHKEKTPSFTVSPDKQFYY 60

Query: 61  CFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSEDK 120
           CFGCGA GNA+ FVM+++ ++FP+A+EELA   G+EV RE+        +     +    
Sbjct: 61  CFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQ-------GRRDQKPRQPTD 113

Query: 121 RSLYDLMGSIAQFYRQQLKV-PANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 179
             LY L+ + ++FYRQ L+  P+ K A++YLK RGLSGEI + FG+G+    WD + ++ 
Sbjct: 114 SPLYPLLDAASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHL 173

Query: 180 GQQRSSEDMLVTAGMLIEN-DNGRRYDRFRGRVMFPIRDRRGRVIGFGGRITEQGTPKYL 238
           G     + +++ AG+LIEN ++G+RYDRFR RVMFPIRD RGR+I FGGR+     PKYL
Sbjct: 174 GADTLQQKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGDDKPKYL 233

Query: 239 NSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTG 298
           NSPETP+FHKG+ELYGLYE  +  R   +I+VVEGYMDV+ALAQ G+  +VA+LGT+T+ 
Sbjct: 234 NSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSE 293

Query: 299 DHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDSYVR 358
           +HL+ LFR    V+ C+DGD+AGR AAWRALE+ LS L+ G   +FLFLP+GEDPDS VR
Sbjct: 294 EHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDSLVR 353

Query: 359 KYGKADFEQQV-ANATPLSQYLFENL-IELHQINLGSHEGKSALRAVATPLIDKIPDPFL 416
             G   F  ++  ++ PL+ Y FE L +E    +L   EGK+ +  +A PLI+KIP   L
Sbjct: 354 AEGTDAFMARINQHSQPLADYFFEQLGVEADPRSL---EGKAHMATLAAPLIEKIPGANL 410

Query: 417 QEILEKLLDERTGFDHQLRRKKARKTENRPAPHKAIKRTPMRDVIALLIQNPSYAEL 473
           ++++   L E TG D Q   + A++    PA        P  D  A+    P Y ++
Sbjct: 411 RQLMRNRLKEITGLDPQQVEQLAQQA---PATSSMPDYDPGYDYDAMASYTPDYGDM 464



 Score = 54.7 bits (130), Expect = 1e-11
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 6/154 (3%)

Query: 437 KKARKTENRPAPHKAIKRTPMRDVIALLIQNPSYAELVPD---LASVRHLMIPGLDTFSE 493
           K  ++ +  P    A    P    +  L+ +P  A  V D    A   HL    L    E
Sbjct: 502 KPWQQRDEAPPRVPAPVEPPTLAALRTLLHHPLLAGKVEDASHFADEEHLYSQLLVALIE 561

Query: 494 VLEKCRQYPHITTGQLLEHWRDSKNETLLSRLASWEIPLVEDNQEELFLDSLDKILAQCV 553
             +K    P +++ QL+  W  ++   LL  LA  E  +V DN E+ F D++  + A+  
Sbjct: 562 AAQK---NPGLSSMQLIARWHGTEQGRLLRALAEKEWLIVADNLEQQFFDTITSLSARQR 618

Query: 554 EKQIENLQAKERSVGLSTEEKRELQDLILKGLKA 587
           E+ +E L  K R   L++EEK +L  L+ + + A
Sbjct: 619 ERSLEQLLRKSRQSELTSEEKTQLLALLSRNVPA 652