Pairwise Alignments

Query, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., DNA primase from Pseudomonas sp. DMC3

 Score =  448 bits (1152), Expect = e-130
 Identities = 229/440 (52%), Positives = 310/440 (70%), Gaps = 20/440 (4%)

Query: 1   MAGHIPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYH 60
           MAG IP+SFIDDLL R DIVDV+ +RV+LKK GKNY+ACCPFH EKTPSFSVS +KQFY+
Sbjct: 1   MAGLIPQSFIDDLLNRTDIVDVVSSRVQLKKAGKNYTACCPFHKEKTPSFSVSPDKQFYY 60

Query: 61  CFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREE----RTPSSPFAKNTPAVK 116
           CFGCGA GNA+ F+M+++ ++FP+A+E+LA   G+E+ REE    R P  P   ++P   
Sbjct: 61  CFGCGAGGNALGFLMDHDNLDFPQAVEDLAKAAGMEIPREESGRERKPRQP--TDSP--- 115

Query: 117 SEDKRSLYDLMGSIAQFYRQQLKV-PANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLV 175
                 LY L+ + A FYRQ LK  P+ K A++YLK RGL+GEI + FG+G+    WD +
Sbjct: 116 ------LYPLLTAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNL 169

Query: 176 RRNFGQQRSSEDMLVTAGMLIEN-DNGRRYDRFRGRVMFPIRDRRGRVIGFGGRITEQGT 234
            ++       +  ++ AG+LIEN + G+RYDRFR RVMFPIRD RGR+I FGGR+     
Sbjct: 170 LKHLSSDTLQQKAMIEAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGDDK 229

Query: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
           PKYLNSPETP+FHKG+ELYGLYE  +  R   +I+VVEGYMDV+ALAQ G+  +VA+LGT
Sbjct: 230 PKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGT 289

Query: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
           +T+ +HL+ LFR   +V+ C+DGD+AGR+AAWRALE  L  L+ G   +FLFLP+GEDPD
Sbjct: 290 ATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDPD 349

Query: 355 SYVRKYGKADFEQQV-ANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPD 413
           + VR  G   F+ ++  +A PL+ Y F+ L E  + +  S EGK+ +  +A PLID++P 
Sbjct: 350 TLVRAEGTDAFKARINQHAQPLADYFFQQLTE--ESDPRSLEGKAHMATLAAPLIDRVPG 407

Query: 414 PFLQEILEKLLDERTGFDHQ 433
             L+ ++ + L E TG   +
Sbjct: 408 ANLRILMRQRLTEITGLSSE 427



 Score = 62.4 bits (150), Expect = 6e-14
 Identities = 37/133 (27%), Positives = 64/133 (48%)

Query: 455 TPMRDVIALLIQNPSYAELVPDLASVRHLMIPGLDTFSEVLEKCRQYPHITTGQLLEHWR 514
           +P    +  L+ +P  A+ V D   +             +LE  ++ P + + QL+  W 
Sbjct: 514 SPTLTALRTLLHHPQLAKRVEDAGHIADENQTNAQLLVALLEAVQKNPKLNSFQLIARWH 573

Query: 515 DSKNETLLSRLASWEIPLVEDNQEELFLDSLDKILAQCVEKQIENLQAKERSVGLSTEEK 574
            ++   LL  LA  E  +  DN E+ F D++  + A+  E+ +E L  K R   LS EEK
Sbjct: 574 GTEQGRLLKALAEKEWLIDGDNLEQQFFDTITSLSARQRERNLEQLLRKARQSELSVEEK 633

Query: 575 RELQDLILKGLKA 587
            +L+DL+ + + A
Sbjct: 634 NQLRDLLSRNVSA 646