Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 288 a.a., RNA polymerase sigma factor RpoH from Rhodanobacter sp000427505 FW510-R12

 Score =  108 bits (270), Expect = 3e-28
 Identities = 81/254 (31%), Positives = 137/254 (53%), Gaps = 11/254 (4%)

Query: 365 LSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 424
           LS E  + +SR   + EA    AKK +V ++LR V+ +A+ Y+  GLQ  DLIQEGNIGL
Sbjct: 32  LSQEEEQALSRDY-LEEANLAAAKK-LVMSHLRFVVHVARGYSGYGLQLADLIQEGNIGL 89

Query: 425 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLN-RISRQML 483
           MKAV +F+  +G +  ++A  WIR  +   I    R +++     +     N R S++ L
Sbjct: 90  MKAVKRFDPDQGVRLVSFAVHWIRAEMHEFILKNWRIVKVATTKAQRKLFFNLRKSKKRL 149

Query: 484 QEMGREPLPEELAERMQMPEDKIRKV-LKIAKEPISMETPIGDDEDSHLGD--FIED--- 537
             M    +   +A+ + +PE  +R++  +++   I  E P+  D+D+      F+ D   
Sbjct: 150 GWMNAAEV-STVAKDLGVPEATVREMESRLSGRDIGFEAPVDADDDAKPAPAAFLVDDGA 208

Query: 538 TTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRE 597
              +   D   A +      D LA L PR   +++ R+ +D ++  TL+++  ++ V+ E
Sbjct: 209 DPYQNVADEDYADNQMETLNDALAHLDPRSRDIIQRRW-LDDSSKATLQDLADEYGVSAE 267

Query: 598 RIRQIEAKALRKLR 611
           RIRQIEA A++K+R
Sbjct: 268 RIRQIEANAMKKMR 281