Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., RNA polymerase sigma factor RpoD from Rhodanobacter sp000427505 FW510-R12

 Score =  707 bits (1824), Expect = 0.0
 Identities = 384/623 (61%), Positives = 456/623 (73%), Gaps = 14/623 (2%)

Query: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65
           QS++K L+ +G EQGYLTYAE+NDHLP +IVD EQ+EDI+ ++  +GI+V + APD D L
Sbjct: 10  QSEIKALISKGLEQGYLTYAEINDHLPDDIVDPEQIEDIMAVLKGVGIEVHDAAPDTDPL 69

Query: 66  ALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 125
           A    ++  DE AAE A A LS+V+SE+GRTTDPVRMYMREMGTVELLTREGEI IAKRI
Sbjct: 70  ADKAGSSTDDEAAAEEAVALLSAVDSEVGRTTDPVRMYMREMGTVELLTREGEIAIAKRI 129

Query: 126 EDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDM----ETEAPTAT 181
           E+G+ QVQ+A+A +P TI  +LE++D+    + RL+++++GF+D  +       E   A 
Sbjct: 130 EEGLGQVQTALASFPLTIELLLEEYDQHLDGKRRLSEILAGFLDLEEAADLARKEKEAAA 189

Query: 182 HIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQ 241
            +  E+ +++  DEDD    DE   EDE+  G S    EEV    EL RE +     KFQ
Sbjct: 190 LLAPEVEDSEEGDEDD----DETATEDEEEAGPSGPDPEEVKRRMELLREHY----AKFQ 241

Query: 242 NLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMK 301
             + A         +  +  D + + F + +L     D  V  LR  ++ +R  ER++M 
Sbjct: 242 --KAAPRAASITDKKIVKLRDQMAEEFLKLKLPSALIDGFVRKLREVVNDIRHHERVLMD 299

Query: 302 AVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQ 361
             V+  KMPK  FI  F  NE N EW+ ++    + +   ++   E I    +KL  IE+
Sbjct: 300 IFVKQVKMPKAEFIKAFPSNEGNPEWVAELSRKRQKWSPNIKTHREAIDAEQEKLAAIER 359

Query: 362 ETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 421
           +  L +  IKDI+R M+ GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
Sbjct: 360 KLFLPLIDIKDINRAMASGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 419

Query: 422 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ 481
           IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
Sbjct: 420 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ 479

Query: 482 MLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLE 541
           MLQ+ GRE  PEELA+ M+MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED    
Sbjct: 480 MLQQFGREATPEELAKEMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGNAS 539

Query: 542 LPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ 601
            P+DSAT T L    RDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ
Sbjct: 540 SPIDSATETGLMETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ 599

Query: 602 IEAKALRKLRHPSRSEVLRSFLD 624
           IEAKALRKLRHPSRSE LRSFLD
Sbjct: 600 IEAKALRKLRHPSRSEQLRSFLD 622