Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., RNA polymerase sigma factor RpoH from Xanthobacter sp. DMC5

 Score = 98.6 bits (244), Expect = 3e-25
 Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 11/236 (4%)

Query: 385 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 444
           R A  ++V ++LRLV  IA  Y   GL   ++I EGN+GLM+AV +FE  +G++ +TYA 
Sbjct: 47  RDAAHKLVTSHLRLVAKIAMGYRGYGLPISEVISEGNVGLMQAVKRFEPEKGFRLATYAM 106

Query: 445 WWIRQAITRSIADQARTIRIPVHMIET---INKLNRISRQMLQEMG--REPLPEELAERM 499
           WWIR +I   I      +++     +     N     S+    E G  R    +++A ++
Sbjct: 107 WWIRASIQEYILRSWSLVKMGTTAAQKKLFFNLRKAKSQISALEEGDLRPDQVQQIATKL 166

Query: 500 QMPEDKIRKVLKIAKEPISMETPIGDD-EDSHLGDFIEDTTL---ELPLDSATATSLKAA 555
            + E  +  + +      S+  PI +D E     D++ D  L   E   +S    + ++A
Sbjct: 167 GVTEQDVVDMNRRLSGDASLNAPIREDSEGGEWQDWLVDERLDQEEQLAESEELANRRSA 226

Query: 556 TRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
               L+ L  RE ++   R   D     TLE++  +F V+RER+RQIE +A  K++
Sbjct: 227 LSGALSVLNDRERRIFEARRLSD--DPMTLEDLAAEFGVSRERVRQIEVRAFEKVQ 280