Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  199 bits (506), Expect = 2e-55
 Identities = 94/224 (41%), Positives = 152/224 (67%)

Query: 388 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 447
           +K M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWI
Sbjct: 96  RKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 155

Query: 448 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIR 507
           RQ I R+I +Q RTIR+P+H+++ +N   R +R++ Q++  EP PEE+A  ++ P  +++
Sbjct: 156 RQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVK 215

Query: 508 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPRE 567
           ++L + +   S++  +G D D  L D + D     P +      L  +    L+ LT ++
Sbjct: 216 RMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQ 275

Query: 568 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
            +V+  RFG+  +   TLE+VG +  +TRER+RQI+ + L++LR
Sbjct: 276 REVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR 319



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 95  RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 128
           R  D  ++Y+ E+G   LLT E E+  A+  + G
Sbjct: 58  RALDATQLYLNEIGFSPLLTPEEEVHFARLSQKG 91