Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., RNA polymerase sigma factor RpoD from Variovorax sp. SCN45

 Score =  630 bits (1624), Expect = 0.0
 Identities = 337/631 (53%), Positives = 446/631 (70%), Gaps = 30/631 (4%)

Query: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65
           +S+LK L+  GK +GYLT+ E++DHLP ++VD+E +E ++ M+NDMG+ V E  PDA+ L
Sbjct: 162 RSRLKTLITLGKTRGYLTHGEISDHLPDKLVDAETMEVVVTMLNDMGVAVYEQTPDAETL 221

Query: 66  ALSDD--TTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 123
            L++   T  T E+A E A AALS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+IAK
Sbjct: 222 LLNNTAPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 281

Query: 124 RIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHI 183
           RIE G+  +  AI+  P TI  ILE    ++  ++ ++ ++ GF +PN+ +         
Sbjct: 282 RIEGGLMAMMEAISASPATIAAILEMAATIREGKVVISTIVDGFSNPNEAD--------- 332

Query: 184 GSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQNL 243
                  D   E+D   ++ DE++D+DG G S    +++      A E+F+ +   F+ +
Sbjct: 333 -------DYVAEED--FDEFDEEDDDDGKGGSKALTKKLEELKRDALERFDRIASLFEKV 383

Query: 244 QLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAV 303
               ++ G  +    +A + + +     R T K  + L + +RT +D VR +ER + + +
Sbjct: 384 HKIYDKEGYGTPAYVKAQEAMSEELMTIRFTAKTIEKLCDLVRTQVDDVRKKERELRRII 443

Query: 304 VEVAKMPKKSFIALFTG----------NESNEEWLDKVLASDKPYVAKVREQEEEIRRSI 353
           V+    P++ FI  F+G          N  N +W++K  A+ KP+ A +      ++   
Sbjct: 444 VDKCGFPQEEFIRDFSGFDKNGNVVASNLLNLKWVEKQAAAGKPWSAVLARNIPPVQELQ 503

Query: 354 QKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 413
           Q+L  I+    + + ++KDI++RM+ GE+ +R AKKEM+EANLRLVISIAKKYTNRGLQF
Sbjct: 504 QRLTDIQSRVVVPLTQLKDINKRMNEGESSSRDAKKEMIEANLRLVISIAKKYTNRGLQF 563

Query: 414 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 473
           LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
Sbjct: 564 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 623

Query: 474 KLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 533
           K+NRISRQ LQE G EP    LA +M++PEDKIRK++KIAKEPISMETPIGDD+DSHLGD
Sbjct: 624 KMNRISRQHLQEFGFEPDAGILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGD 683

Query: 534 FIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFD 593
           FIED++   P+++A    L+   +D+L  LTPREAKVLRMRFGI+M+TDHTLEEVGKQFD
Sbjct: 684 FIEDSSNTAPIEAAMQAGLRDVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFD 743

Query: 594 VTRERIRQIEAKALRKLRHPSRSEVLRSFLD 624
           VTRERIRQIEAKALRKL+HPSRS+ LRSF+D
Sbjct: 744 VTRERIRQIEAKALRKLKHPSRSDKLRSFID 774