Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., RNA polymerase sigma factor RpoS from Variovorax sp. SCN45

 Score =  150 bits (380), Expect = 7e-41
 Identities = 91/246 (36%), Positives = 139/246 (56%), Gaps = 9/246 (3%)

Query: 387 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 446
           A++ M+E NLRLV+SIAK Y  RG+   DLI+EGN+GLM A+ KFE  RG++FSTYATWW
Sbjct: 102 ARQSMIEHNLRLVVSIAKGYLGRGVPMSDLIEEGNLGLMHAITKFEPERGFRFSTYATWW 161

Query: 447 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQM---LQEMGREP---LPEELAERMQ 500
           IRQ++ R++  QAR IR+PVH++  + ++ R  R +    + +   P     E++A  + 
Sbjct: 162 IRQSVERAVMTQARAIRLPVHVVRELQQVLRARRTLEGDAEFLAHRPDGVRVEDIAALLG 221

Query: 501 MPEDKIRKVLKIAKEPISMET--PIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRD 558
                +  +L +A+ P S++     GDD  +       D     P  +  A  ++     
Sbjct: 222 RDVQAVADLLALAEAPRSLDAGDARGDDGFTLADTVASDDEQSSPSGATHAHEVERLLDQ 281

Query: 559 VLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP-SRSE 617
            +  L  RE +VL  R+G+      TLE +  +  +TRER+RQI+ +AL K+R   +RS 
Sbjct: 282 WVHALDAREREVLEGRYGLHDREPETLEVLSVRLGLTRERVRQIQNEALAKMRRQLARSG 341

Query: 618 VLRSFL 623
           V R  L
Sbjct: 342 VGRDAL 347