Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  218 bits (554), Expect = 4e-61
 Identities = 120/293 (40%), Positives = 183/293 (62%), Gaps = 13/293 (4%)

Query: 329 DKVLASDKPYVA------KVREQEEEIRRSIQKLQMIEQETS----LSVERIKDISRRMS 378
           D  L SD+  VA       VRE+ +   +S+   QM   E      L+ E     +RR  
Sbjct: 26  DAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL 85

Query: 379 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 438
            G+  AR   K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++
Sbjct: 86  RGDEAAR---KRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 142

Query: 439 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAER 498
           FSTYATWWIRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EP PEE+A  
Sbjct: 143 FSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALE 202

Query: 499 MQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRD 558
           +  P D + K+L++ +   S++TPIG D D  L D + D+    P  S     ++ +  +
Sbjct: 203 LDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLN 262

Query: 559 VLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
            L  L P++ +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 263 WLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315



 Score = 34.3 bits (77), Expect = 9e-06
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 67  LSDDTTITDEDAAEAAAAALSSVESEI---GRTTDPVRMYMREMGTVELLTREGEIDIAK 123
           L  D  +T ++   A   A   V  E     ++ D  +MY+ E+G   LLT E E+  A+
Sbjct: 23  LETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYAR 82

Query: 124 RIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLI 164
           R   G    +  + E    +  +++   R     L L DLI
Sbjct: 83  RALRGDEAARKRMIE--SNLRLVVKISRRYSNRGLALLDLI 121