Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

 Score =  551 bits (1421), Expect = e-161
 Identities = 317/658 (48%), Positives = 425/658 (64%), Gaps = 43/658 (6%)

Query: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVET---APDA 62
           ++ +K+L+ R K++GY+TY E+ND LP + + SEQ+EDI+  +N+MG+ +VE    + D 
Sbjct: 27  EASVKKLIARAKKRGYITYDELNDALPQDQMSSEQIEDIMSALNEMGVNIVENEEASEDG 86

Query: 63  DDLALSDDTTITDEDAAEAAAAALSSVESE--IGRTTDPVRMYMREMGTVELLTREGEID 120
           D+    ++    D+D+++     L + + +  + RT DPVRMY+REMG VELL+REGEI 
Sbjct: 87  DEQREREEADDADDDSSDDDGPKLVTEKKKETVDRTDDPVRMYLREMGAVELLSREGEIA 146

Query: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA 180
           IAKRIE G + +   + E P T   I+E    +   E++L +++   +D    +  AP  
Sbjct: 147 IAKRIEAGRDTMILGLCESPTTFNAIIEWSTALNNGEMQLREILD--LDAMLSKDPAPEN 204

Query: 181 THIGSELSEADLAD-------------EDDAVVEDEDED--------EDEDGDGESSDSE 219
              G+E  + ++++             E+++   DEDED        EDE+ D   S ++
Sbjct: 205 MEEGAEDDDGEISEKTAGPSFKEEEEPEEESADGDEDEDGAPRARREEDEEEDNTLSLAQ 264

Query: 220 EEVGIDPELAREKFNELR------GKFQNLQLAVNEFGRDSHQASEAS------DLVLDI 267
            E  + P +A EKF  +        K Q  ++     G    Q +E S       L  ++
Sbjct: 265 MEETLKP-MALEKFATITEIFRAFSKAQESRMVAMANGESLSQKAEDSYHELREQLTAEV 323

Query: 268 FREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEW 327
               +   ++ ++LV+ L     R+      +++ + E  K+ +K F+  + G+E ++ W
Sbjct: 324 -ESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLR-LAERHKVSRKDFLERYMGHELDDAW 381

Query: 328 LDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRA 387
           L+KV   DK + A    +   + R   ++  I Q T +S+   + I   +  GE +AR A
Sbjct: 382 LEKVQGLDKKWAAFAAAEGRAVERIRNEVSEIAQATGMSLSEFRRIVNMVQKGEREARIA 441

Query: 388 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 447
           KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
Sbjct: 442 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 501

Query: 448 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIR 507
           RQAITRSIADQARTIRIPVHMIETINKL R SRQ L E GREP PEE+AER+ MP +K+R
Sbjct: 502 RQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVR 561

Query: 508 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPRE 567
           KV+KIAKEPIS+ETPIGD+EDSHLGDFIED    +P+D+A   +LK     VLA LTPRE
Sbjct: 562 KVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPRE 621

Query: 568 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDE 625
            +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  +RSFLD+
Sbjct: 622 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ 679