Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score =  790 bits (2041), Expect = 0.0
 Identities = 409/620 (65%), Positives = 491/620 (79%), Gaps = 11/620 (1%)

Query: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65
           QS++K+L+ RG+EQGYLTYAEVNDHLP +I D EQVEDII+MINDMGI V E+APDAD L
Sbjct: 8   QSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFESAPDADAL 67

Query: 66  ALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 125
            L++  T  DE AAE AAAAL++VE++IGRTTDPVRMYMREMGTVELLTREGEI+IAKRI
Sbjct: 68  LLAEADT--DEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRI 125

Query: 126 EDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHIGS 185
           E+GI +V  AIA +PGT+ YIL ++DRV  E  RL+D++SG++DP+D         +I +
Sbjct: 126 EEGIREVMGAIAHFPGTVDYILGEYDRVTTEGGRLSDVLSGYIDPDD---------NIAA 176

Query: 186 ELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQNLQL 245
              E  +     A  ++E +D++E+ +    + E E G DP +A ++F  +  + Q    
Sbjct: 177 PTEEVPIPGAKAAAAKEESDDDEEESESGDDEEEAESGPDPVVAAQRFGAVSDQLQATSK 236

Query: 246 AVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVE 305
            + + GR+  ++ EA   + D+F   +L PKQF+ LVE +R +++R+R QER +M+  V 
Sbjct: 237 VLKKNGRNHKESIEALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVR 296

Query: 306 VAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQETSL 365
            A+MP+  F+ +F  NE+++ W   +   +  + A + E+   I    QKL  +E ET L
Sbjct: 297 DARMPRADFLRMFPSNETDQTWSGDLAKRNTKWAAALGEKNAAIVACQQKLIDLETETGL 356

Query: 366 SVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 425
           +V  IK+I+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
Sbjct: 357 TVAEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 416

Query: 426 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 485
           KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE
Sbjct: 417 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 476

Query: 486 MGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 545
           MGREP PEEL ERM+MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED+T++ P+D
Sbjct: 477 MGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPID 536

Query: 546 SATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK 605
            AT  SLK ATRDVL+GLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
Sbjct: 537 VATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK 596

Query: 606 ALRKLRHPSRSEVLRSFLDE 625
           ALRKLRHP+RSE LRSFLDE
Sbjct: 597 ALRKLRHPTRSEHLRSFLDE 616