Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  205 bits (522), Expect = 2e-57
 Identities = 104/268 (38%), Positives = 179/268 (66%), Gaps = 3/268 (1%)

Query: 356 LQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 415
           LQ I +   L+ +    +++R+  G+   + A +++ +ANLR V+S+AK+Y N+GL   D
Sbjct: 22  LQEIGKVDLLTPDEEVSLAQRIKEGD---QFALEKLTKANLRFVVSVAKQYQNQGLSLGD 78

Query: 416 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 475
           LI EGN+GL+KA  +F+  RG+KF +YA WWIRQ+I +++A+Q+R +R+P++ + ++NK+
Sbjct: 79  LINEGNLGLIKAAKRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNRVGSLNKI 138

Query: 476 NRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 535
           ++   ++ Q+  REP PEE+AE +++   ++   LKI+   +S++ P    E++ L D +
Sbjct: 139 SKSFSELEQKFEREPSPEEIAEVLELTTAEVVDTLKISGRHVSVDAPFVQGEENRLLDVL 198

Query: 536 EDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVT 595
           E+   E P       SL+   +  L+ LT REA V+ + FG++     TLEE+G++F++T
Sbjct: 199 ENEDEESPDMGLMNDSLRKEVQRALSTLTKREADVITLYFGLNGEHSLTLEEIGEKFNLT 258

Query: 596 RERIRQIEAKALRKLRHPSRSEVLRSFL 623
           RER+RQI+ KA+R+LRH SRS+ L+ +L
Sbjct: 259 RERVRQIKEKAIRRLRHTSRSKALKPYL 286



 Score = 35.0 bits (79), Expect = 4e-06
 Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 95  RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQ 154
           R +  +  Y++E+G V+LLT + E+ +A+RI++G       + +    + +++    + Q
Sbjct: 13  RESQSLDKYLQEIGKVDLLTPDEEVSLAQRIKEGDQFALEKLTK--ANLRFVVSVAKQYQ 70

Query: 155 AEELRLTDLIS 165
            + L L DLI+
Sbjct: 71  NQGLSLGDLIN 81