Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., RNA polymerase sigma factor RpoD from Magnetospirillum magneticum AMB-1

 Score =  543 bits (1398), Expect = e-158
 Identities = 328/657 (49%), Positives = 423/657 (64%), Gaps = 50/657 (7%)

Query: 9   LKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL--A 66
           +K++V +GKE+GY+TY E+N  +P E V SEQ+ED + M++++GI VVE+    D+   A
Sbjct: 31  VKKMVAKGKERGYVTYDELNAAMPPEEVSSEQIEDTMAMLSELGINVVESEEGEDNTPEA 90

Query: 67  LSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 126
             ++TT T     E  + A +  E ++GRT DPVRMY+REMG+VELL+REGEI IAKRIE
Sbjct: 91  AEEETTET-----EGYSGAGNVDEEDLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIE 145

Query: 127 DGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLIS------GFVDPNDM------- 173
            G   +   I E P T+  +++  D +   ++ L D+I          +P ++       
Sbjct: 146 AGREMMIGGICESPLTLRAVVDWHDALVEGKMLLRDIIDLDATYGADPEPEELAEVEAEG 205

Query: 174 ---ETEAPTATHIGSELSEAD-LADEDDAVVEDEDEDEDE-DGDGESSDSEEE----VGI 224
              E  AP          EA+  A+ ++   E+  E E E +G+GE+ + EE       +
Sbjct: 206 VIVEEAAPAGAAEAKPEGEAEPKAEGEEGEKEEGAEGEPEVEGEGEAEEGEENSISLAAM 265

Query: 225 DPEL---AREKFNELRG------KFQNLQLAVNEFGRDSHQASEAS--DLVLDIFR---E 270
           + EL     E F  +        K Q+ +LA    G     A E     L L++ R    
Sbjct: 266 ETELLPIVLETFEVIAATHHKLEKVQDQRLAALNKGEAVTPAMEKKYDKLKLELVRLMDG 325

Query: 271 FRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEWLDK 330
             L   + + LVE L     R+  QE  +++ + E  ++ ++ F+  + G+E +  W+++
Sbjct: 326 IHLNNARIEQLVEQLNGLNRRLMMQEGRLLR-LAESCRVKRQDFLDAYYGSELDPNWIEQ 384

Query: 331 VLASDKPYV---AKVREQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRA 387
           V    K +    A+  +   +IR +I     I  E  L +   + I + +  GE +A RA
Sbjct: 385 VTQRSKQWKDFGARHGKDAADIRATIAD---ISAEAGLPISEYRRIVQTVQRGEREASRA 441

Query: 388 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 447
           KKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
Sbjct: 442 KKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 501

Query: 448 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIR 507
           RQAITRSIADQARTIRIPVHMIETINKL R SRQML E+GREP PEELAE++ MP +K+R
Sbjct: 502 RQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLSMPLEKVR 561

Query: 508 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPRE 567
           KVLKIAKEPIS+ETPIGD+EDSHLGDFIED    LPLD+A   +L+  T  VLA LTPRE
Sbjct: 562 KVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRVLASLTPRE 621

Query: 568 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 624
            +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 622 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 678