Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  206 bits (524), Expect = 1e-57
 Identities = 112/295 (37%), Positives = 181/295 (61%), Gaps = 11/295 (3%)

Query: 325 EEWLDKVLASDKPYVAKVREQEEEIRRSIQK--------LQMIEQETSLSVERIKDISRR 376
           E + +K L+ ++P    + E+E   + + Q+        L  I     L+ E     +RR
Sbjct: 23  EAFDEKALSEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARR 82

Query: 377 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG 436
              G+  +RR    M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG
Sbjct: 83  ALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139

Query: 437 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELA 496
           ++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  ++  EP  EE+A
Sbjct: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199

Query: 497 ERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAAT 556
           E++  P D + ++L++ +   S++TP+G D +  L D + D     P D+     +K + 
Sbjct: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259

Query: 557 RDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
              L  L  ++ +VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+LR
Sbjct: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314



 Score = 31.2 bits (69), Expect = 7e-05
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 63  DDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 122
           D+ ALS++   +D D AE    +  + +    R  D  ++Y+ E+G   LLT E E+  A
Sbjct: 26  DEKALSEEEP-SDNDLAEEELLSQGATQ----RVLDATQLYLGEIGYSPLLTAEEEVYFA 80

Query: 123 KR 124
           +R
Sbjct: 81  RR 82