Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  941 bits (2433), Expect = 0.0
 Identities = 489/626 (78%), Positives = 546/626 (87%), Gaps = 12/626 (1%)

Query: 1   MDQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP 60
           M+QNPQSQLK LV RGKEQGYLTYAEVNDHLP +IVDS+Q+EDIIQMINDMGI+V+E AP
Sbjct: 1   MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60

Query: 61  DADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120
           DADDL L+++TT TDEDA EAAA  LSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
Sbjct: 61  DADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120

Query: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA 180
           IAKRIEDGINQVQ ++AEYP  I Y+LEQ+DRV+AEE RL+DLI+GFVDPN  E  APTA
Sbjct: 121 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEEMAPTA 180

Query: 181 THIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKF 240
           TH+GSELS+ DL D       DEDEDE EDGD +++D +    IDPELAREKF ELR ++
Sbjct: 181 THVGSELSQEDLDD-------DEDEDE-EDGDDDAADDDNS--IDPELAREKFAELRAQY 230

Query: 241 QNLQLAVNEFGRDSHQASEASDLVL-DIFREFRLTPKQFDHLVETLRTSMDRVRTQERLV 299
              +  +   GR SH A++   L L ++F++FRL PKQFD+LV ++R  MDRVRTQERL+
Sbjct: 231 VVTRDTIKAKGR-SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 289

Query: 300 MKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMI 359
           MK  VE  KMPKK+FI LFTGNE++E W +  +A +KP+  K+ +  EE++R +QKL+ I
Sbjct: 290 MKLCVEQCKMPKKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQI 349

Query: 360 EQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 419
           E+ET L++E++KDI+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 350 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 409

Query: 420 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 479
           GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 410 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 469

Query: 480 RQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 539
           RQMLQEMGREP PEELAERM MPEDKIRKV KIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 470 RQMLQEMGREPTPEELAERMLMPEDKIRKVPKIAKEPISMETPIGDDEDSHLGDFIEDTT 529

Query: 540 LELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 599
           LELPLDSAT  SL+AAT DVLAGLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI
Sbjct: 530 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 589

Query: 600 RQIEAKALRKLRHPSRSEVLRSFLDE 625
           RQIEAKALRKLRHPSRSEVLRSFLD+
Sbjct: 590 RQIEAKALRKLRHPSRSEVLRSFLDD 615