Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase sigma factor, sigma-70 family from Kangiella aquimarina DSM 16071

 Score =  808 bits (2088), Expect = 0.0
 Identities = 418/624 (66%), Positives = 500/624 (80%), Gaps = 11/624 (1%)

Query: 2   DQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPD 61
           + + QSQLK L+ RGKEQGYLTYAEVNDHLP +IVD EQ+EDII+MINDMGI+V ET PD
Sbjct: 3   ENSQQSQLKLLIARGKEQGYLTYAEVNDHLPPDIVDPEQIEDIIRMINDMGIQVYETTPD 62

Query: 62  ADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDI 121
           AD+L ++D++ +TDE+AAE AAAAL+SV+SE GRTTDPVRMYMREMG+VELLTREGEIDI
Sbjct: 63  ADELLMNDES-VTDEEAAEEAAAALASVDSEFGRTTDPVRMYMREMGSVELLTREGEIDI 121

Query: 122 AKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTAT 181
           AKRIE+GI QV  AIA YP TI  +LE+F   + E++RLT++++GF D  + E       
Sbjct: 122 AKRIEEGIRQVLGAIANYPDTIRILLEEFALYEDEQVRLTEIVTGFTDGEEAE------- 174

Query: 182 HIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQ 241
            +  E   A +A+  + +  D+D D+D+D + E+   E + G DPE A  +F EL+ ++ 
Sbjct: 175 FVQEESEAAQIANASEELDNDDDVDDDDDDEDET---EVDTGPDPEEAAARFAELKKQYD 231

Query: 242 NLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMK 301
               AV ++GR    A +  D + ++F + RL P+ FD LV  LR  MD +R QER +M 
Sbjct: 232 KTVKAVEKYGRTHKSAIKQLDAMKELFMQLRLAPRMFDLLVTNLREKMDGIREQERYIMM 291

Query: 302 AVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQ 361
             V  A+MP+K+FI+ F+G+E++  W+++ +     Y   + E  EEI ++ +KLQ+IE+
Sbjct: 292 LAVNGARMPRKTFISTFSGSEADPTWIEQHVKKKSKYSEPLAEHAEEILKAQRKLQLIEE 351

Query: 362 ETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 421
             SLSV  IK+ +R MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
Sbjct: 352 SCSLSVMEIKEANREMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 411

Query: 422 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ 481
           IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
Sbjct: 412 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ 471

Query: 482 MLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLE 541
           MLQEMGREP PEELAERM+MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT++
Sbjct: 472 MLQEMGREPQPEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTID 531

Query: 542 LPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ 601
            P+D+AT  SLK  T ++LAGLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ
Sbjct: 532 SPVDAATGESLKEVTDEILAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ 591

Query: 602 IEAKALRKLRHPSRSEVLRSFLDE 625
           IEAKALRKLRHPSRSE LR++LDE
Sbjct: 592 IEAKALRKLRHPSRSEKLRTYLDE 615