Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., RNA polymerase sigma factor RpoS from Erwinia tracheiphila SCR3

 Score =  196 bits (499), Expect = 1e-54
 Identities = 102/248 (41%), Positives = 160/248 (64%), Gaps = 4/248 (1%)

Query: 365 LSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 424
           L+ E     +RR   G+  +RR    M+E+NLRLV+ IA++Y+NRGL  LDLI+EGN+GL
Sbjct: 71  LTAEEEVFFARRALRGDIPSRR---RMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGL 127

Query: 425 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 484
           ++AV+KF+  +G++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  
Sbjct: 128 IRAVEKFDPEKGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELAH 187

Query: 485 EMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETP-IGDDEDSHLGDFIEDTTLELP 543
           ++  EP  EE+AE++  P D + ++L++ +   S++T  +G D D  L D + D     P
Sbjct: 188 KLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTTLLGGDSDKALLDILADEKDNGP 247

Query: 544 LDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE 603
            D      +K +    L  L  ++ +VL  RFG+      TLE+VG +  +TRER+RQI+
Sbjct: 248 EDCTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGSEIGLTRERVRQIQ 307

Query: 604 AKALRKLR 611
            + LR+LR
Sbjct: 308 VEGLRRLR 315



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 95  RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQ 154
           R  D  ++Y+ E+G   LLT E E+  A+R   G   + S        +  +++   R  
Sbjct: 53  RVLDATQLYLGEIGYSPLLTAEEEVFFARRALRG--DIPSRRRMIESNLRLVVKIARRYS 110

Query: 155 AEELRLTDLI 164
              L L DLI
Sbjct: 111 NRGLALLDLI 120