Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., RNA polymerase, sigma 70 subunit, RpoD from Enterobacter asburiae PDN3

 Score =  934 bits (2414), Expect = 0.0
 Identities = 480/626 (76%), Positives = 545/626 (87%), Gaps = 12/626 (1%)

Query: 1   MDQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP 60
           M+QNPQSQLK LV RGKEQGYLTYAEVNDHLP +IVDS+Q+EDIIQMINDMGI+V+E AP
Sbjct: 46  MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 105

Query: 61  DADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120
           DADDL L++ +  TDEDA EAAA  LSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
Sbjct: 106 DADDLLLAETSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 165

Query: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA 180
           IAKRIEDGINQVQ ++AEYP  I Y+LEQ+DRV+AEE RL+DLI+GFVDPN  E  APTA
Sbjct: 166 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA 225

Query: 181 THIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKF 240
           TH+GSELS+ ++ D++D   EDE+E +D+  D ++S       IDPELAREKF ELR ++
Sbjct: 226 THVGSELSQEEMDDDED---EDEEESDDDTADDDNS-------IDPELAREKFAELRTQY 275

Query: 241 QNLQLAVNEFGRDSHQASEASDLVL-DIFREFRLTPKQFDHLVETLRTSMDRVRTQERLV 299
           +  +  +   GR SH A++   L L ++F++FRL PKQFD+LV ++R  MDRVRTQER++
Sbjct: 276 EVTRDTIKAKGR-SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERII 334

Query: 300 MKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMI 359
           MK  VE  KMPKK+FI LFTGNE++E W +  +A +KP+  K+ + ++++ R +QKL  I
Sbjct: 335 MKLCVEQCKMPKKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVKDDVHRGLQKLHQI 394

Query: 360 EQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 419
           E+ET L++E++KDI+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 395 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 454

Query: 420 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 479
           GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 455 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 514

Query: 480 RQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 539
           RQMLQEMGREP PEELAERM MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 515 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 574

Query: 540 LELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 599
           LELPLDSAT  SL+AAT DVLAGLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI
Sbjct: 575 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 634

Query: 600 RQIEAKALRKLRHPSRSEVLRSFLDE 625
           RQIEAKALRKLRHPSRSEVLRSFLD+
Sbjct: 635 RQIEAKALRKLRHPSRSEVLRSFLDD 660