Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECRC62

 Score =  205 bits (522), Expect = 2e-57
 Identities = 111/291 (38%), Positives = 178/291 (61%), Gaps = 11/291 (3%)

Query: 329 DKVLASDKPYVAKVREQEEEIRRSIQK--------LQMIEQETSLSVERIKDISRRMSIG 380
           +K L  ++P    + E+E   + + Q+        L  I     L+ E     +RR   G
Sbjct: 27  EKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86

Query: 381 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 440
           +  +RR    M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FS
Sbjct: 87  DVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143

Query: 441 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQ 500
           TYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  ++  EP  EE+AE++ 
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203

Query: 501 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVL 560
            P D + ++L++ +   S++TP+G D +  L D + D     P D+     +K +    L
Sbjct: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263

Query: 561 AGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
             L  ++ +VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+LR
Sbjct: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 63  DDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 122
           D+ AL ++   +D D AE    +  + +    R  D  ++Y+ E+G   LLT E E+  A
Sbjct: 26  DEKALVEEEP-SDNDLAEEELLSQGATQ----RVLDATQLYLGEIGYSPLLTAEEEVYFA 80

Query: 123 KR 124
           +R
Sbjct: 81  RR 82