Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., RNA polymerase sigma factor RpoD from Escherichia coli ECRC62

 Score =  940 bits (2429), Expect = 0.0
 Identities = 490/626 (78%), Positives = 546/626 (87%), Gaps = 14/626 (2%)

Query: 1   MDQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP 60
           M+QNPQSQLK LV RGKEQGYLTYAEVNDHLP +IVDS+Q+EDIIQMINDMGI+V+E AP
Sbjct: 1   MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60

Query: 61  DADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120
           DADDL L+++T   DEDAAEAAA  LSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
Sbjct: 61  DADDLMLAENTA--DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118

Query: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA 180
           IAKRIEDGINQVQ ++AEYP  I Y+LEQ+DRV+AEE RL+DLI+GFVDPN  E  APTA
Sbjct: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA 178

Query: 181 THIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKF 240
           TH+GSELS+ DL D       DEDEDE EDGD +S+D +    IDPELAREKF ELR ++
Sbjct: 179 THVGSELSQEDLDD-------DEDEDE-EDGDDDSADDDNS--IDPELAREKFAELRAQY 228

Query: 241 QNLQLAVNEFGRDSHQASEASDLVL-DIFREFRLTPKQFDHLVETLRTSMDRVRTQERLV 299
              +  +   GR SH A++   L L ++F++FRL PKQFD+LV ++R  MDRVRTQERL+
Sbjct: 229 VVTRDTIKAKGR-SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 300 MKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMI 359
           MK  VE  KMPKK+FI LFTGNE+++ W +  +A +KP+  K+ +  EE+ R++QKLQ I
Sbjct: 288 MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 360 EQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 419
           E+ET L++E++KDI+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 420 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 479
           GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 480 RQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 539
           RQMLQEMGREP PEELAERM MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 540 LELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 599
           LELPLDSAT  SL+AAT DVLAGLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI
Sbjct: 528 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 600 RQIEAKALRKLRHPSRSEVLRSFLDE 625
           RQIEAKALRKLRHPSRSEVLRSFLD+
Sbjct: 588 RQIEAKALRKLRHPSRSEVLRSFLDD 613