Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  209 bits (533), Expect = 1e-58
 Identities = 106/268 (39%), Positives = 179/268 (66%), Gaps = 3/268 (1%)

Query: 356 LQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 415
           LQ I +   L+ +    +++R+  G+   + A +++ +ANLR V+S+AK+Y N+GL   D
Sbjct: 22  LQEIGKVDLLTADEEVVLAKRIREGD---QLALEKLTKANLRFVVSVAKQYQNQGLSLGD 78

Query: 416 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 475
           LI EGN+GL+KA  +F+  RG+KF +YA WWIRQ+I +++A+Q+R +R+P++ + ++NK+
Sbjct: 79  LINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNRVGSLNKI 138

Query: 476 NRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 535
           ++   ++ Q   REP PEELAE +++   ++   +KI+   +SM+ P    E++ L D +
Sbjct: 139 SKTFSELEQRFEREPSPEELAEVLEVTAGEVVDTMKISGRHVSMDAPFVQGEENSLLDVL 198

Query: 536 EDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVT 595
           E+   E P D     SL+   +  L+ LT REA V+ + FG++     TLEE+G++F++T
Sbjct: 199 ENDGEEKPDDGLMNDSLRKEVQRALSTLTQREADVITLYFGLNGEHAMTLEEIGEKFNLT 258

Query: 596 RERIRQIEAKALRKLRHPSRSEVLRSFL 623
           RER+RQI+ KA+R+LRH SRS+ L+ +L
Sbjct: 259 RERVRQIKEKAIRRLRHTSRSKTLKPYL 286



 Score = 35.8 bits (81), Expect = 3e-06
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 95  RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQ 154
           R +  +  Y++E+G V+LLT + E+ +AKRI +G       + +    + +++    + Q
Sbjct: 13  RESQSLDKYLQEIGKVDLLTADEEVVLAKRIREGDQLALEKLTK--ANLRFVVSVAKQYQ 70

Query: 155 AEELRLTDLIS 165
            + L L DLI+
Sbjct: 71  NQGLSLGDLIN 81