Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., RNA polymerase sigma factor RpoD from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  531 bits (1368), Expect = e-155
 Identities = 310/632 (49%), Positives = 406/632 (64%), Gaps = 26/632 (4%)

Query: 9   LKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLALS 68
           +K+ + + K +GY+T  E+N  LP+E V  + +ED + M+++MG+ VVE   DA +    
Sbjct: 26  VKKFIKQAKARGYVTMEELNKVLPSEEVTPDAIEDTLAMLSEMGVNVVEAEEDAQE---- 81

Query: 69  DDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 128
                TD  AA   A A +  +S   RT DPVRMY+REMG+VELL+REGEI IAKRIE G
Sbjct: 82  --QQSTDVAAAAGTAVAETPAKSAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG 139

Query: 129 INQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLIS-----GFVDPNDMETEAPTATHI 183
            + + S + E   T   I+   D ++   + L ++I      G ++P+ +   A      
Sbjct: 140 RDAMISGLCESALTFEAIMVWRDELENNRILLREVIDLDATYGVLNPSSLPGAAQPE--- 196

Query: 184 GSELSEAD--LADEDDAVVEDEDEDEDEDGDGESSDSEEE------VGIDPELARE--KF 233
           G E  EA+   A ED    +DED+D+ +DG G S  + E       + +   +A +   F
Sbjct: 197 GEEEDEAEDKPAAEDKPESDDEDDDDFDDGGGMSISALEAELRDGVMDVLNAIAADFGAF 256

Query: 234 NELRGKFQNLQLAVNEFGRDSHQASEA-SDLVLDIFREFRLTPKQFDHLVETLRTSMDRV 292
             L+ K    +L          +A +A +  + D  +  +L   + + LVE L     R+
Sbjct: 257 RALQDKLVQARLKGEVLSAKDEKAYQALTTSISDRLKTMKLNNNRIEALVEQLYAINKRL 316

Query: 293 RTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRS 352
              E  +++ + +   + +  F+  + G+E +  W D++      +      +  +I   
Sbjct: 317 IGLEGRLLR-LADSYGISRPEFLKAYFGSELDPTWTDRIKDQGVRWTKFSENEASQIATI 375

Query: 353 IQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 412
              +  +  E  L ++  + I + +  GE +AR+AKKEMVEANLRLVISIAKKYTNRGLQ
Sbjct: 376 RSDVAAVALEAGLPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQ 435

Query: 413 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 472
           FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI
Sbjct: 436 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 495

Query: 473 NKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLG 532
           NK+ R SRQML E+GREP PEELAE++ MP +K+RKVLKIAKEPIS+ETPIGD+EDSHLG
Sbjct: 496 NKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLG 555

Query: 533 DFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQF 592
           DFIED    LP+D+A  ++L+  T  VLA LTPRE +VLRMRFGI MNTDHTLEEVG+QF
Sbjct: 556 DFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQF 615

Query: 593 DVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 624
            VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 616 SVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 647