Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., RNA polymerase sigma factor RpoH from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 11/239 (4%)

Query: 387 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 446
           A   +V ++LRLV  IA  Y   GL   ++I EGN+GLM+AV KF+  +G++ +TYA WW
Sbjct: 49  AAHRLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFDADKGFRLATYAMWW 108

Query: 447 IRQAITRSIADQARTIRIPVHMIE--TINKLNRISRQMLQEMGREPLPEEL---AERMQM 501
           IR +I   I      +++     +      L +   Q+      +  PE L   A ++ +
Sbjct: 109 IRASIQEYILRSWSLVKMGTTAAQKKLFFNLRKAKSQISAFEEGDLHPEHLAAIATKLGV 168

Query: 502 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL---ELPLDSATATSLK-AATR 557
            E+++  + +      S+  P+  D +S   D++ D T    E  L       ++ +  +
Sbjct: 169 TEEEVTNMNRRLGGDASLNAPLRADGESEWQDWLADDTAVSQETQLADDEEKGIRMSLLQ 228

Query: 558 DVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 616
           + +  LT RE  +L  R   D     TLEE+  Q+ V+RER+RQIE +A  KL+   R+
Sbjct: 229 EAMEELTDREKHILTERRLKD--DPVTLEELAGQYGVSRERVRQIEVRAFEKLQKAMRA 285