Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., Sigma-70 from Alteromonas macleodii MIT1002

 Score =  884 bits (2283), Expect = 0.0
 Identities = 457/625 (73%), Positives = 522/625 (83%), Gaps = 15/625 (2%)

Query: 1   MDQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP 60
           M Q+ QSQ+K L+ +GKEQGYLT+AEVNDHLP +IVDS+Q+EDII+MINDMGI+V E+AP
Sbjct: 1   MAQSKQSQIKLLIAKGKEQGYLTFAEVNDHLPQDIVDSDQIEDIIRMINDMGIQVSESAP 60

Query: 61  DADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120
           DAD+L + +     DEDAAEAAA AL++VESEIGRTTDPVRMYMREMGTVELLTREGEI+
Sbjct: 61  DADELLMQEANA--DEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTREGEIE 118

Query: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA 180
           IAKRIEDGINQVQ ++AEYP  I Y+L+Q+D  +AEE+RL+D+ISGFVDPND +  APTA
Sbjct: 119 IAKRIEDGINQVQCSVAEYPEAITYLLDQWDLYEAEEIRLSDIISGFVDPNDEQDLAPTA 178

Query: 181 THIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKF 240
           TH+GSELSE +L DEDD   +++D+D DED          + G+DPELARE+F ELR ++
Sbjct: 179 THVGSELSEEELDDEDD---DEDDDDSDED----------DSGVDPELARERFTELREQY 225

Query: 241 QNLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVM 300
              +  + + GR    +    + + D+F+EFRL PKQFD +V+ +R  MD+VR QERLVM
Sbjct: 226 LKTREVIEKKGRAHADSRTQINALSDVFKEFRLVPKQFDRMVKNMREMMDKVRIQERLVM 285

Query: 301 KAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIE 360
           K  V  AKMPKK FI  F GNE++  WL + + S  PY A +   +EEI R I K+  +E
Sbjct: 286 KFCVVNAKMPKKDFIKAFAGNETSNAWLHEAVKSGAPYAADLAVNQEEIERCISKMNQVE 345

Query: 361 QETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 420
           QET L +  IKDI+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
Sbjct: 346 QETGLVIADIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 405

Query: 421 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 480
           NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR
Sbjct: 406 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 465

Query: 481 QMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL 540
           QMLQEMGREP PEEL+ERM MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED+T+
Sbjct: 466 QMLQEMGREPTPEELSERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTI 525

Query: 541 ELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR 600
             PLDSAT  SLK AT++VLAGLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR
Sbjct: 526 IQPLDSATGGSLKDATQEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR 585

Query: 601 QIEAKALRKLRHPSRSEVLRSFLDE 625
           QIEAKALRKLRHPSRSE LRSFLDE
Sbjct: 586 QIEAKALRKLRHPSRSEQLRSFLDE 610