Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Alteromonas macleodii MIT1002

 Score =  206 bits (525), Expect = 1e-57
 Identities = 101/225 (44%), Positives = 154/225 (68%)

Query: 387 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 446
           ++K M+ +NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 88  SRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 147

Query: 447 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKI 506
           IRQ I R+I +Q RTIR+P+H+++ +N   R SR++ Q++  EP  EE+A  +  P + +
Sbjct: 148 IRQTIERAIMNQTRTIRLPIHVVKELNVYLRASRELSQKLDHEPTAEEIALALDKPVEDV 207

Query: 507 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPR 566
            K+L++ +   S++TPIG + D  L D I D     P +S   + +K+     L  L P+
Sbjct: 208 TKMLRLNERITSVDTPIGGENDKALLDIIADEKEFSPEESLQDSDIKSNIVTWLEELNPK 267

Query: 567 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
           + +VL  RFG+      TLE+VG +  +TRER+RQI+ +ALR+LR
Sbjct: 268 QREVLARRFGLMGYEPSTLEDVGAEIGLTRERVRQIQVEALRRLR 312



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)

Query: 54  KVVETAPDADDLALSD-------DTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMRE 106
           K +E+ P  DD+ + D       D T+T++   E   A  S  + +  +  D  ++Y+ E
Sbjct: 6   KALESTPQ-DDVEVIDMPADMKADETLTNDADLENDDAIFS--QDDQPKNLDATQLYLGE 62

Query: 107 MGTVELLTREGEIDIAKR 124
           +G   LLT E E+  A+R
Sbjct: 63  IGFSPLLTAEEEVYFARR 80