Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

 Score =  535 bits (1378), Expect = e-156
 Identities = 317/658 (48%), Positives = 417/658 (63%), Gaps = 47/658 (7%)

Query: 9   LKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLALS 68
           +K+++   K++GY+T  E+N  LP+E V SEQ+ED + M++DMGI V+E   DA++ A +
Sbjct: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDE-DAEEAAPA 89

Query: 69  DDTTITDEDAAEAA--------AAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120
           +D   +D + +E          A A +  +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149

Query: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLI------SG-------- 166
           IAKRIE G   + S + E P T   ++   D +      L ++I      SG        
Sbjct: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQ 209

Query: 167 FVDPNDMETEAPTATH------IGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEE 220
           F  P  +E +   A        + +   + D+ D     +  E+E+ED+D +   S +  
Sbjct: 210 FQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDD-ESNLSLAAM 268

Query: 221 EVGIDPELAR------EKFNELRGKFQNLQLAVN-------EFGRDSHQASEASDLVLDI 267
           E  + P++        + + +LR K Q+ Q+            G++  +  E  D ++  
Sbjct: 269 EAELRPQVMETLDTIADTYKKLR-KLQDQQVEARLACTGTLSSGQE-RRYKELKDQLITA 326

Query: 268 FREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEW 327
            +   L   + D LVE L     R+   E  +++ + E   + + SF+  + G E +  W
Sbjct: 327 VKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLR-LAESYGVKRDSFLEQYHGAELDPNW 385

Query: 328 LDKVL-ASDKPYVAKVREQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARR 386
           +  +   + + +    RE+   IR   Q++Q +  ET +S+   + I   +  GE +AR 
Sbjct: 386 MKSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARI 445

Query: 387 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 446
           AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW
Sbjct: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505

Query: 447 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKI 506
           IRQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREP PEELAE++ MP +K+
Sbjct: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 565

Query: 507 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPR 566
           RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +L+  T  VLA LTPR
Sbjct: 566 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 625

Query: 567 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 624
           E +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 626 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683